PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG489500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 397aa    MW: 40819.1 Da    PI: 7.566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG489500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.7e-06284324954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  Pavir.5KG489500.1.p 284 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 324
                          599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.97E-10266329No hitNo description
PROSITE profilePS5088814.449275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-13281334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-10284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDATFGWAGA GHHVDDYFSR QQVGCGRFEM DEAFLGACFG QLQCDGVLAA AGGGDTGACQ  60
VSSNCGAFEG AAGMDSDPLA FLGAGTGDAF DAGLLDAALA FTRELGDGGA VSNGAMLSSY  120
SGTTGGNISS GESNNYSSGG HDTEVVSPTS IMSPTTTAPR PFTHASSHQQ ALHAKRKVAD  180
EYPATGNATT APAPAALPRP GVAKRRAATN ISFGQGAQHS ARDPSGGGGY EPDMEAMAQV  240
KEMIYRAAAM RPVNLGPEVA AAASAEKPRR KNVRISSDPQ TVAARLRRER VSERLRVLQK  300
LVPGGSKMDT ASMLDEAASY LKFLKSQVQA LETLGTSSKS TSTSGVPSRS QHYNYFGSSS  360
SSNPGFLGLP RRSSNISPAG YVNPNGSTTN TGSKLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271EKPRRKN
2266271KPRRKN
3284289RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.51980.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554551e-112AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701869.10.0PREDICTED: transcription factor bHLH69-like
TrEMBLK3XIM10.0K3XIM1_SETIT; Uncharacterized protein
STRINGSi001743m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-35bHLH family protein